| Class | Description |
|---|---|
| PairFilter | |
| PairFormatter | Converts reads to FASTQ format, and sends them in batches to a writer. |
| PairScanner | Scans a BAM file and feeds reads encountered to a pool of gngs.pair.PairLocator instances for matching to pairs. |
| PairWriter | A simple class that whose purpose is purely to paralleise writing output to a Writer. |
| Paired | |
| PairedReadComparator |