Paired

Summary:
Field
Property
Constructor
Method

gngs.pair.Paired

@groovy.transform.CompileStatic
class Paired<PairType>
extends java.lang.Object

Field Summary

Fields
Modifiers	Name	Description
`java.lang.String`	`key`
`PairType`	`r1`
`PairType`	`r2`

Properties Summary

Properties
Type	Name and description
`static byte`	`R1_READ_NEGATIVE_STRAND_FLAG`
`static byte`	`R2_READ_NEGATIVE_STRAND_FLAG`
`static byte`	`REORDER_IN_OUTPUT`
`int`	`flags`

Constructor Summary

Constructors
Constructor and description
`Paired (java.lang.String key, PairType r1, PairType r2, boolean r1NegStrand, boolean r2NegStrand, boolean flipOrder, int rand)`

Methods Summary

Methods
Type Params	Return Type	Name and description
	`boolean`	`getR1NegativeStrandFlag()`
	`boolean`	`getR2NegativeStrandFlag()`
	`boolean`	`getReorderRequired()`

Inherited Methods Summary

Inherited Methods
Methods inherited from class	Name
`class java.lang.Object`	`java.lang.Object#wait(long), java.lang.Object#wait(long, int), java.lang.Object#wait(), java.lang.Object#equals(java.lang.Object), java.lang.Object#toString(), java.lang.Object#hashCode(), java.lang.Object#getClass(), java.lang.Object#notify(), java.lang.Object#notifyAll()`

- Field Detail
  - public java.lang.String key
  - public PairType r1
  - public PairType r2
- Property Detail
  - static final byte R1_READ_NEGATIVE_STRAND_FLAG
  - static final byte R2_READ_NEGATIVE_STRAND_FLAG
  - static final byte REORDER_IN_OUTPUT
  - int flags
- Constructor Detail
  - Paired(java.lang.String key, PairType r1, PairType r2, boolean r1NegStrand, boolean r2NegStrand, boolean flipOrder, int rand)
- Method Detail
  - boolean getR1NegativeStrandFlag()
  - boolean getR2NegativeStrandFlag()
  - boolean getReorderRequired()

Summary:
Field
Property
Constructor
Method

Groovy Documentation