class VCFtoPed extends ToolBase
Simple utility to extract sample id and sex from VCF file, and then write that information as a PED file. Parents are left undefined.
| Type | Name and description |
|---|---|
java.util.Map<java.lang.String, VCF> |
samplesToVCF |
java.util.List<VCF> |
vcfs |
| Constructor and description |
|---|
VCFtoPed
() |
| Type Params | Return Type | Name and description |
|---|---|---|
|
static void |
main(java.lang.String[] args) |
|
void |
run() |
|
void |
writePEDLine(java.lang.String sample) |
Groovy Documentation