@groovy.util.logging.Log class SampleCorrelationPlot extends ToolBase
Computes pairwise SNP correlation for a set of input VCFs, outputting as a plot or a table in TSV format.
The input VCFs can be single or multisample. Correlation is computed on the dosage of each SNP present in each sample, eg: 0 - homref, 1 - ref/alt, 2 - homalt.
Example of running:
gngstool SampleCorrelationPlot -ocorr correlations.tsv -o correlations.png test1.vcf test2.vcf ...
| Constructor and description |
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SampleCorrelationPlot
() |