MergePartitionedVCFs

Summary:
Property
Constructor
Method

| Detail:
Property
Constructor
Method

gngs.tools.MergePartitionedVCFs

```
@groovy.util.logging.Log
class MergePartitionedVCFs
extends ToolBase
```
A tool to merge together multiple VCFs that contain variants from distinct regions but which may be interleaved between different VCFs
See Also:
MergePartitionedVCFs

Properties Summary

Properties
Type	Name and description
`java.util.List<java.lang.String>`	`contigs`
`gngs.tools.VCFMergerActor`	`merger`

Constructor Summary

Constructors
Constructor and description
`MergePartitionedVCFs ()`

Methods Summary

Methods
Type Params	Return Type	Name and description
	`static void`	`main(java.lang.String[] args)`
	`void`	`readVCF(java.lang.String vcfPath, int index)`
	`void`	`run()`

- Property Detail
  - java.util.List<java.lang.String> contigs
  - gngs.tools.VCFMergerActor merger
- Constructor Detail
  - MergePartitionedVCFs()
- Method Detail
  - static void main(java.lang.String[] args)
  - @groovy.transform.CompileStatic void readVCF(java.lang.String vcfPath, int index)
  - @java.lang.Override void run()

Summary:
Property
Constructor
Method

| Detail:
Property
Constructor
Method

Groovy Documentation