GeneCovStats

Summary:
Property
Constructor
Method

| Detail:
Property
Constructor
Method

gngs.tools.GeneCovStats

@groovy.util.logging.Log
class GeneCovStats
extends ToolBase

Properties Summary

Properties
Type	Name and description
`java.util.List<SAM>`	`bams`
`RefGenes`	`refGene`
`Regions`	`targetRegions`

Constructor Summary

Constructors
Constructor and description
`GeneCovStats ()`

Methods Summary

Methods
Type Params	Return Type	Name and description
	`java.util.List<CoverageStats>`	`calcGeneStats(Regions gene_regions)`
	`java.util.Map<java.lang.String, java.lang.Object>`	`calculateGeneMasterStats(Regions geneRegions)`
	`java.util.List<Regions>`	`computeExonicRegions(java.util.List<java.lang.String> genes)`
	`static void`	`main(java.lang.String[] args)`
	`void`	`run()`

- Property Detail
  - java.util.List<SAM> bams
  - RefGenes refGene
  - Regions targetRegions
- Constructor Detail
  - GeneCovStats()
- Method Detail
  - java.util.List<CoverageStats> calcGeneStats(Regions gene_regions)
  - java.util.Map<java.lang.String, java.lang.Object> calculateGeneMasterStats(Regions geneRegions)
  - @groovy.transform.CompileStatic java.util.List<Regions> computeExonicRegions(java.util.List<java.lang.String> genes)
  - static void main(java.lang.String[] args)
  - @java.lang.Override void run()

Summary:
Property
Constructor
Method

| Detail:
Property
Constructor
Method

Groovy Documentation