DeletionPlot

Summary:
Property
Constructor
Method

| Detail:
Property
Constructor
Method

gngs.tools.DeletionPlot

@groovy.util.logging.Log
class DeletionPlot
extends ToolBase

Authors:: Simon Sadedin

Properties Summary

Properties
Type	Name and description
`SAM`	`bam`
`int`	`minSplitReadLength`
`int`	`splitReadBinSize`

Constructor Summary

Constructors
Constructor and description
`DeletionPlot ()`

Methods Summary

Methods
Type Params	Return Type	Name and description
	`graxxia.Matrix`	`countSplitReads(SAM bam)`
	`void`	`createCoverageStats()`
	`static void`	`main(java.lang.Object args)`
	`void`	`plotCoverage()`
	`void`	`plotSplitReads()`
	`void`	`run()`
	`void`	`saveJson(java.lang.String path)`

- Property Detail
  - SAM bam
  - final int minSplitReadLength
  - int splitReadBinSize
- Constructor Detail
  - DeletionPlot()
- Method Detail
  - @groovy.transform.CompileStatic graxxia.Matrix countSplitReads(SAM bam)
  - void createCoverageStats()
  - static void main(java.lang.Object args)
  - void plotCoverage()
  - void plotSplitReads()
  - @java.lang.Override void run()
  - void saveJson(java.lang.String path)

Summary:
Property
Constructor
Method

| Detail:
Property
Constructor
Method

Groovy Documentation