| Class | Description |
|---|---|
| CoverageDownsampler | Accepts SampleReadCount objects as messages and calculates a moving window of their values, emitting the window mean instead of the original values. |
| CoveragePrinter | |
| CoverageSummary | |
| PositionCounts | |
| ReadRange | |
| SampleReadCount | The count of reads overlapping a base at a position for a sample |
| TargetedCoverageCalculator | Optimised class to count reads over a given set of target regions |