A specific allele in the context of a Variant in a VCF file
Each variant (line) in a VCF file may contain multiple alternate alleles. This class represents one alternate allele in a VCF file.
| Constructor and description |
|---|
Variant.Allele
(int index, int start, int end, java.lang.String alt, java.lang.String type) |
| Methods inherited from class | Name |
|---|---|
class java.lang.Object |
java.lang.Object#wait(long, int), java.lang.Object#wait(long), java.lang.Object#wait(), java.lang.Object#equals(java.lang.Object), java.lang.Object#toString(), java.lang.Object#hashCode(), java.lang.Object#getClass(), java.lang.Object#notify(), java.lang.Object#notifyAll() |
Actual end position of genomic change for this Allele relative to reference
Actual start position of genomic change for this Allele, relative to reference
INS, DEL or SNP, INV, DUP, DEL
Groovy Documentation