VCFParseContext (groovy-ngs-utils API)

Summary:
Property
Constructor
Method

| Detail:
Property
Constructor
Method

gngs.VCFParseContext

Properties Summary

Properties
Type	Name and description
`Closure`	`c`
`java.io.Writer`	`discardWriter`
`boolean`	`flushedHeader`
`Map`	`options`
`java.io.Writer`	`out`
`VCF`	`vcf`

Constructor Summary

Constructors
Constructor and description
`VCFParseContext (VCF vcf, Closure c, Map options, java.io.Writer out, java.io.Writer discardWriter)`

Methods Summary

Methods
Type Params	Return Type	Name and description
	`void`	`add(Variant v)`
	`void`	`close()`
	`void`	`discard(Variant v)`
	`void`	`flushHeader()`
	`void`	`write(java.lang.Appendable a, Variant v)`

Inherited Methods Summary

Inherited Methods
Methods inherited from class	Name
`class java.lang.Object`	`java.lang.Object#wait(long, int), java.lang.Object#wait(long), java.lang.Object#wait(), java.lang.Object#equals(java.lang.Object), java.lang.Object#toString(), java.lang.Object#hashCode(), java.lang.Object#getClass(), java.lang.Object#notify(), java.lang.Object#notifyAll()`

- Property Detail
  - final Closure c
  - final java.io.Writer discardWriter
  - boolean flushedHeader
  - final Map options
  - final java.io.Writer out
  - final VCF vcf
- Constructor Detail
  - VCFParseContext(VCF vcf, Closure c, Map options, java.io.Writer out, java.io.Writer discardWriter)
- Method Detail
  - void add(Variant v)
  - void close()
  - void discard(Variant v)
  - void flushHeader()
  - void write(java.lang.Appendable a, Variant v)

Summary:
Property
Constructor
Method

| Detail:
Property
Constructor
Method

Groovy Documentation