class SAMRecordCategory extends java.lang.Object
A convenience class to streamline working with SAMRecord objects
| Constructor and description |
|---|
SAMRecordCategory
() |
| Type Params | Return Type | Name and description |
|---|---|---|
|
static java.lang.Object |
asType(htsjdk.samtools.SAMRecord r, java.lang.Class clazz) |
|
static java.lang.Object |
asType(htsjdk.samtools.BAMRecord r, java.lang.Class clazz) |
|
static java.util.List<XA> |
getAlternateAlignments(htsjdk.samtools.BAMRecord record) |
|
static java.lang.Object |
toRegion(htsjdk.samtools.BAMRecord r) |
| Methods inherited from class | Name |
|---|---|
class java.lang.Object |
java.lang.Object#wait(long), java.lang.Object#wait(long, int), java.lang.Object#wait(), java.lang.Object#equals(java.lang.Object), java.lang.Object#toString(), java.lang.Object#hashCode(), java.lang.Object#getClass(), java.lang.Object#notify(), java.lang.Object#notifyAll() |