@groovy.transform.CompileStatic class GnomADCNVDatabase extends CNVDatabase
A CNVDatabase implementation for CNVs from the gnomAD sv dataset.
Frequency statistics and overlaps are include all SVs (not just CNVs) except unresolved breakends and variants failing the PASS filter.
| Type | Name and description |
|---|---|
VCFIndex |
gnomad |
double |
mutualOverlapFraction |
| Constructor and description |
|---|
GnomADCNVDatabase
(VCFIndex gnomad) |
| Type Params | Return Type | Name and description |
|---|---|---|
|
double |
maxFreq(java.util.Map options, gngs.Region region) |
|
double |
maxFreq(gngs.Region region) |
|
java.util.List<gngs.Region> |
queryOverlapping(gngs.Region r) |
| Methods inherited from class | Name |
|---|---|
class CNVDatabase |
maxFreq, queryOverlapping |
Groovy Documentation