class GATKIntervalSummary extends Regions
Reads output of GATK DepthOfCoverage interval summary and makes it available as a Regions object
| Constructor and description |
|---|
GATKIntervalSummary
(java.lang.String fileName) |
| Type Params | Return Type | Name and description |
|---|---|---|
|
java.util.Iterator<gngs.Region> |
iterator() |
|
GATKIntervalSummary |
load() |
| Methods inherited from class | Name |
|---|---|
class Regions |
addRegion, addRegion, backward, balancedSplit, bkr, contains, coverage, distanceTo, distanceTo, eachOverlap, eachRange, eachRange, endingAt, enhance, forward, getAt, getAtIndex, getContigRegions, getExtrasAtPosition, getNumberOfRanges, getOverlapRegions, getOverlaps, getOverlaps, getSpan, intersect, intersect, intersect, intersect, intersectImpl, intersectRegion, intersectRegions, isEmpty, iterator, nearest, nextRange, overlaps, overlaps, overlaps, overlaps, plus, previousRange, reduce, regionsEndingAt, regionsStartingAt, remove, save, save, save, size, startingAt, subtract, subtractFrom, subtractFrom, thin, thinnedIndices, toHTML, toListMap, toString, uniquify, widen, window |
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