FASTHRead

Summary:
Property
Constructor
Method

| Detail:
Property
Constructor
Method

gngs.FASTHRead

```
@groovy.transform.CompileStatic
class FASTHRead
extends java.lang.Object
```
Models a single FASTH read, including the header (with name), barcodes, bases and quality information.

Properties Summary

Properties
Type	Name and description
`java.lang.String`	`barcodebases`
`java.lang.String`	`barcodequals`
`java.lang.String`	`header`
`java.lang.String`	`ibases`
`java.lang.String`	`iquals`
`java.lang.CharSequence`	`name`
`java.lang.String`	`r1bases`
`java.lang.String`	`r1quals`
`java.lang.String`	`r2bases`
`java.lang.String`	`r2quals`

Constructor Summary

Constructors
Constructor and description
`FASTHRead (java.lang.String r1bases, java.lang.String r2bases, java.lang.String barcodebases, java.lang.String ibases)` This constructor is really just for testing purposes.
`FASTHRead (java.lang.String header, java.lang.String r1bases, java.lang.String r2bases, java.lang.String barcodebases, java.lang.String ibases, java.lang.String r1quals, java.lang.String r2quals, java.lang.String barcodequals, java.lang.String iquals)`

Methods Summary

Methods
Type Params	Return Type	Name and description
	`int`	`size()`
	`void`	`write(java.io.Writer w)`

Inherited Methods Summary

Inherited Methods
Methods inherited from class	Name
`class java.lang.Object`	`java.lang.Object#wait(long), java.lang.Object#wait(long, int), java.lang.Object#wait(), java.lang.Object#equals(java.lang.Object), java.lang.Object#toString(), java.lang.Object#hashCode(), java.lang.Object#getClass(), java.lang.Object#notify(), java.lang.Object#notifyAll()`

- Property Detail
  - java.lang.String barcodebases
  - java.lang.String barcodequals
  - java.lang.String header
  - java.lang.String ibases
  - java.lang.String iquals
  - java.lang.CharSequence name
  - java.lang.String r1bases
  - java.lang.String r1quals
  - java.lang.String r2bases
  - java.lang.String r2quals
- Constructor Detail
  - FASTHRead(java.lang.String r1bases, java.lang.String r2bases, java.lang.String barcodebases, java.lang.String ibases)
    
    This constructor is really just for testing purposes. However you can use it if you want to fake all the data except the bases.
    Parameters:
    bases
  - FASTHRead(java.lang.String header, java.lang.String r1bases, java.lang.String r2bases, java.lang.String barcodebases, java.lang.String ibases, java.lang.String r1quals, java.lang.String r2quals, java.lang.String barcodequals, java.lang.String iquals)
- Method Detail
  - int size()
  - void write(java.io.Writer w)

Summary:
Property
Constructor
Method

| Detail:
Property
Constructor
Method

Groovy Documentation