BaseCounts

Summary:
Property
Constructor
Method

| Detail:
Property
Constructor
Method

gngs.BaseCounts

```
@groovy.transform.CompileStatic
class BaseCounts
extends java.lang.Object
```
Stores a set of base counts for a base read at a given position, and supports scoring metrics.
Authors:
simon

Properties Summary

Properties
Type	Name and description
`int`	`a`
`int`	`c`
`char`	`consensus`
`int`	`g`
`int`	`n`
`double`	`score`
`int`	`t`

Constructor Summary

Constructors
Constructor and description
`BaseCounts (java.util.List<java.lang.String> seqs, int pos)`

Methods Summary

Methods
Type Params	Return Type	Name and description
	`double`	`bestScore()`
	`char`	`getConsensus()`
	`double`	`getScore()`
	`double`	`score()`
	`java.lang.String`	`toString()`

Inherited Methods Summary

Inherited Methods
Methods inherited from class	Name
`class java.lang.Object`	`java.lang.Object#wait(long), java.lang.Object#wait(long, int), java.lang.Object#wait(), java.lang.Object#equals(java.lang.Object), java.lang.Object#toString(), java.lang.Object#hashCode(), java.lang.Object#getClass(), java.lang.Object#notify(), java.lang.Object#notifyAll()`

- Property Detail
  - int a
  - int c
  - char consensus
  - int g
  - int n
  - double score
  - int t
- Constructor Detail
  - BaseCounts(java.util.List<java.lang.String> seqs, int pos)
- Method Detail
  - double bestScore()
  - char getConsensus()
  - double getScore()
  - double score()
  - java.lang.String toString()

Summary:
Property
Constructor
Method

| Detail:
Property
Constructor
Method

Groovy Documentation