VEPDiff

Summary:
Property
Constructor
Method

| Detail:
Property
Constructor
Method

VEPDiff

```
@groovy.util.logging.Log
class VEPDiff
extends java.lang.Object
```
Finds differences in VEP annotations for identical variants in two VCFs
Authors:
Simon Sadedin

Properties Summary

Properties
Type	Name and description
`gngs.VCF`	`vcf1`
`gngs.VCF`	`vcf2`

Constructor Summary

Constructors
Constructor and description
`VEPDiff (gngs.VCF vcf1, gngs.VCF vcf2)`
`VEPDiff (java.lang.String vcf1, java.lang.String vcf2)`

Methods Summary

Methods
Type Params	Return Type	Name and description
	`java.util.List<java.util.Map>`	`findDifferences()` Return a list of maps containing identical variants having different VEP consequences or features between the two VCFs
	`static void`	`main(java.lang.String[] args)`
	`void`	`run(java.io.PrintWriter out, java.lang.Object outputHTML)`

Inherited Methods Summary

Inherited Methods
Methods inherited from class	Name
`class java.lang.Object`	`java.lang.Object#wait(long), java.lang.Object#wait(long, int), java.lang.Object#wait(), java.lang.Object#equals(java.lang.Object), java.lang.Object#toString(), java.lang.Object#hashCode(), java.lang.Object#getClass(), java.lang.Object#notify(), java.lang.Object#notifyAll()`

- Property Detail
  - gngs.VCF vcf1
  - gngs.VCF vcf2
- Constructor Detail
  - VEPDiff(gngs.VCF vcf1, gngs.VCF vcf2)
  - VEPDiff(java.lang.String vcf1, java.lang.String vcf2)
- Method Detail
  - java.util.List<java.util.Map> findDifferences()
    
    Return a list of maps containing identical variants having different VEP consequences or features between the two VCFs
  - static void main(java.lang.String[] args)
  - void run(java.io.PrintWriter out, java.lang.Object outputHTML)

Summary:
Property
Constructor
Method

| Detail:
Property
Constructor
Method

Groovy Documentation