class ClinVar extends java.lang.Object
A thin wrapper around a RangedData object to add some utility functions for accessing clinvar data.
| Type | Name and description |
|---|---|
java.util.List |
CLINVAR_COLUMNSColumns from schema of clinvar in UCSC table |
RangedData |
clinvar |
java.lang.String |
clinvarFile |
| Constructor and description |
|---|
ClinVar
(java.lang.String clinvarFile) |
ClinVar
(RangedData clinvar) |
| Type Params | Return Type | Name and description |
|---|---|---|
|
ClinVar |
parse() |
|
java.util.List<Region> |
queryOverlapping(gngs.Region r)Convenience method to return CNVS overlapping the specified region |
| Methods inherited from class | Name |
|---|---|
class java.lang.Object |
java.lang.Object#wait(long), java.lang.Object#wait(long, int), java.lang.Object#wait(), java.lang.Object#equals(java.lang.Object), java.lang.Object#toString(), java.lang.Object#hashCode(), java.lang.Object#getClass(), java.lang.Object#notify(), java.lang.Object#notifyAll() |
Columns from schema of clinvar in UCSC table
Convenience method to return CNVS overlapping the specified region @return
Groovy Documentation